SNP Profiles of GU 133 /C   View Data

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 Key

 1234567891011121314
_Input profile
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
1._GU_133_/C
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
2._GC-08-164-4-07
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
3._GC-08-164-4-07
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
4._GC-01-116-6-13
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
5._GC-01-116-6-13
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
6._GC-01-116-6-13
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
7._GC-01-116-6-13
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
8._GC-01-116-6-13
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
9._GU_133_/C
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
10._GU_133_/C
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
11._GU_133_/C
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
12._GU_133_/C
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
13._GU_133_/C
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
14._GU_133_/C
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
15._GU_133_/C
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
16._GC-08-164-4-07
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
17._GC-08-164-4-07
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
18._GC-08-164-4-07
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
19._GC-08-164-4-07
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
20._GU_133_/C
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
21._GU_133_/C
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
22._RUQ_190
_GGCGCC_____CCGG___
23._RUQ_190
CCGGCGCCTTCCCCAAGGCCGGCCAAGG
24._RUQ_190
__CG___CC_GG_GG___
25._RUQ_190
__CG______CC_CC__
26._GC-01-116-6-13
GGGGCGGGAA__AAGGGGGGGGAAGG
27._MITC-000670
GGGGCGGGAA__AAGGGGGGGGAAGG
 1516171819202122232425262728
_Input profile
CCGGGGGGCCACCCGGCCAAGGGGAACC
1._GU_133_/C
CCGGGGGGCCACCCGGCCAAGGGGAACC
2._GC-08-164-4-07
CCGGGGGGCCACCCGGCCAAGGGGAACC
3._GC-08-164-4-07
CCGGGGGGCCACCCGGCCAAGGGGAACC
4._GC-01-116-6-13
CCGGGGGGCCACCCGGCCAAGGGGAACC
5._GC-01-116-6-13
CCGGGGGGCCACCCGGCCAAGGGGAACC
6._GC-01-116-6-13
CCGGGGGGCCACCCGGCCAAGGGGAACC
7._GC-01-116-6-13
CCGGGGGGCCACCCGGCCAAGGGGAACC
8._GC-01-116-6-13
CCGGGGGGCCACCCGGCCAAGGGGAACC
9._GU_133_/C
CCGGGGGGCCACCCGGCCAAGGGGAACC
10._GU_133_/C
CCGGGGGGCCACCCGGCCAAGGGGAACC
11._GU_133_/C
CCGGGGGGCCACCCGGCCAAGGGGAACC
12._GU_133_/C
CCGGGGGGCCACCCGGCCAAGGGGAACC
13._GU_133_/C
CCGGGGGGCCACCCGGCCAAGGGGAACC
14._GU_133_/C
CCGGGGGGCCACCCGGCCAAGGGGAACC
15._GU_133_/C
CCGGGGGGCCACCCGGCCAAGGGGAACC
16._GC-08-164-4-07
CCGGGGGGCCACCCGGCCAAGGGGAACC
17._GC-08-164-4-07
CCGGGGGGCCACCCGGCCAAGGGGAACC
18._GC-08-164-4-07
CCGGGGGGCCACCCGGCCAAGGGGAACC
19._GC-08-164-4-07
CCGGGGGGCCACCCGG_AAGGGGAACC
20._GU_133_/C
CCGGGGGGCCACCCGGCCAAGGGGAACC
21._GU_133_/C
CCGGGGGGCCACCCGG_AAGGGGAACC
22._RUQ_190
_GGGG_CCACCCGGCCAAGG_AACC
23._RUQ_190
CCGGGGAACCACCCGGCCAAGGGGAACC
24._RUQ_190
_GGGGAA_ACCC__AA____
25._RUQ_190
_CC___ACCC_____AA_
26._GC-01-116-6-13
GGCCCC_GGACCCCC_AA_GGAAGG
27._MITC-000670
GGCCCC_GGACCCCC_AA_GGAAGG
 29303132333435       
_Input profile
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
1._GU_133_/C
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
2._GC-08-164-4-07
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
3._GC-08-164-4-07
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
4._GC-01-116-6-13
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
5._GC-01-116-6-13
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
6._GC-01-116-6-13
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
7._GC-01-116-6-13
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
8._GC-01-116-6-13
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
9._GU_133_/C
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
10._GU_133_/C
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
11._GU_133_/C
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
12._GU_133_/C
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
13._GU_133_/C
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
14._GU_133_/C
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
15._GU_133_/C
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
16._GC-08-164-4-07
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
17._GC-08-164-4-07
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
18._GC-08-164-4-07
CC_TTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
19._GC-08-164-4-07
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
20._GU_133_/C
CC_TTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
21._GU_133_/C
CCAATTTTAAATGGX_XX_XX_XX_XX_XX_XX_X
22._RUQ_190
CCAATTTTAA__X_XX_XX_XX_XX_XX_XX_X
23._RUQ_190
CCAATTGTAAATGGX_XX_XX_XX_XX_XX_XX_X
24._RUQ_190
____AA__X_XX_XX_XX_XX_XX_XX_X
25._RUQ_190
GGAATT_AA__X_XX_XX_XX_XX_XX_XX_X
26._GC-01-116-6-13
GGAAAAAAAAATGGX_XX_XX_XX_XX_XX_XX_X
27._MITC-000670
GGAAAAAAAAATGGX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_133_/C

 
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Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

1._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

2._GU_133_/C GC-08-164-4-07

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._GU_133_/C GC-08-164-4-07

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

4._GU_133_/C GC-01-116-6-13

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

5._GU_133_/C GC-01-116-6-13

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

6._GU_133_/C GC-01-116-6-13

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

7._GU_133_/C GC-01-116-6-13

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._GU_133_/C GC-01-116-6-13

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

10._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

11._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

12._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

13._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

14._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

15._GU_133_/C

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

16._GU_133_/C GC-08-164-4-07

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._GU_133_/C GC-08-164-4-07

identical
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

18._GU_133_/C GC-08-164-4-07

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

19._GU_133_/C GC-08-164-4-07

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._GU_133_/C

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

21._GU_133_/C

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

22._GU_133_/C RUQ_190

identical
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._GU_133_/C RUQ_190

95.7 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_133_/C RUQ_190

90.9 %
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._GU_133_/C RUQ_190

81.8 %
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

53.3 %
30 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

53.3 %
30 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1270
6TcSNP1165 7TcSNP1144 8TcSNP1075 9TcSNP1062 10TcSNP1060
11TcSNP998 12TcSNP994 13TcSNP953 14TcSNP929 15TcSNP917
16TcSNP872 17TcSNP723 18TcSNP645 19TcSNP619 20TcSNP591
21TcSNP577 22TcSNP560 23TcSNP534 24TcSNP529 25TcSNP469
26TcSNP429 27TcSNP372 28TcSNP242 29TcSNP226 30TcSNP193
31TcSNP151 32TcSNP150 33TcSNP144 34TcSNP32 35TcSNP25